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Guides
Discover
Workspaces
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Home
Guides
Recipes
API Reference
Changelog
Discussions
Replication Strategies
Introducing Pennsieve
Welcome!
How is Pennsieve used by scientists?
Using Pennsieve for collaborative science
Project spotlights
Internal data management and inter-institutional collaborations
Automated cell classification and report generation
FAIR Publishing of large scale datasets
Workspace and User Management
Overview of workspace and user management
Workspace Feature Set
Dataset and File Management
Overview of dataset and file management
Data Management Feature Set
Markdown Guide
Workflows and Integrations
Overview of analytic workflows and infrastructure
Workflow Feature Set
Pennsieve Repositories
Overview of Pennsieve Repositories
Open Repositories
Open Repository Feature Set
Pennsieve Office Hours
Resources
The Pennsieve Ontology Browser
The Pennsieve CDE Catalog
Pennsieve Workspaces
Pennsieve web application
Datasets
Files and Folders
Uploading files using the Pennsieve Agent
Viewing dataset upload manifests
Virus scanning in Pennsieve
Metadata
Metadata Models and Templates
Metadata Records
Replication Strategies
Dataset configuration and settings
Interacting with scientific data
Timeseries Viewer
Generic Data Viewers
Leveraging Webhooks for external integrations
Collections
Pennsieve Repositories
Pennsieve Data Publishing
Introduction to Pennsieve data publishing
Data Publishing Schema (V4)
Common Dataset Licenses
Pennsieve Discover
Publishing under Embargo
Pennsieve code publishing
Open data repositories
Pennsieve open repositories
Submitting a dataset proposal
Supported open repositories
SPARC
NIH HEAL Initiative
Epilepsy.Science
Interacting with public datasets
Downloading a Public Dataset using AWS
Accessing previous versions of public datasets
Pennsieve Dataset Submission Requirements
Pennsieve Analytics
Introduction to Pennsieve Analytics
Compute and Storage Resource
How Pennsieve Accesses Your AWS Account
Setup and Configuration
Compute Nodes
LLM Access
Environments & Layers
Interactive Notebooks
Workflows
Workflow Parameters & Configuration Guide
Cost estimates
Applications
Publishing Apps to the Pennsieve App Store from GitHub
Configuring Your App with app.yml
Processors
Renaming a GitHub Repository Behind an App Store Application
Programmatic Access
Introduction to the Pennsieve API
The Pennsieve Agent
Installing the Pennsieve Agent
Configuring client credentials
Uploading with the Pennsieve Agent
Downloading a Dataset with the Pennsieve Agent
Mapping datasets locally [BETA]
The Python Client
Installing the Python Client
Uploading data using Python
Accessing Timeseries Data in Python
Direct Access Through AWS
AWS Account Configuration
Installing the AWS Command Line Interface
Copy a public dataset to your own AWS account
Platform Integrations
ORCID
GitHub
Pennsieve Apps
Policies
Pennsieve Platform Preservation Commitment Statement
Pennsieve Terms of Service
Privacy Policy
Other
Pennsieve Compute Node — Security Review
Pennsieve Technology Stack
Troubleshooting Data Uploads
Pennsieve Funding Sources
Pennsieve Platform Security Overview
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Replication Strategies
Ingesting data from third party sources and databases
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