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Home Guides Recipes API Reference Changelog Discussions

These docs are for v1.0. Click to read the latest docs for v3.0.

Documentation

Welcome to Pennsieve!
Pennsieve sandbox

Uploading Data

Uploading data to Pennsieve
Uploading files programmatically
Uploading files using the web browser

Dataset Management

Creating and deleting datasets
Organizing files in a dataset
Dataset Overview
Dataset Permissions
Transfer ownership of a dataset
Dataset Contributors
Dataset Settings
Dataset Status
Dataset Collections
Finding Datasets
Dataset Templates
Dataset Activity Log
Viewing dataset upload manifests

File Management

Moving and renaming files and folders
Downloading files and folders
Associating files with metadata
File Details Page
Supported File Formats
Viewing files
Discussions on files
Time Series Viewer
Clinical Imaging Viewer
Uploading data using CLI
What is a package and what are source-files?

Metadata Management

Introduction to metadata on Pennsieve
Creating metadata models
Creating relationships between metadata models
Creating metadata records
Creating links between metadata records
Linking records to files
Visualizing the metadata graph structure
Search All Data
Exporting search results

Integrations

Introduction to integrations

Pennsieve Discover

Overview of Pennsieve Discover
Data Use Agreements
What is an embargoed dataset?
Publication Schema

Publishing Datasets

Overview of data publishing
Adding Publishers to your Pennsieve accounts
Submitting a dataset for publication
Reviewing Datasets for Publication
Submitting a revised dataset for publication
Accessing embargoed datasets
Preventing files from being included during publishing
ORCID iDs on the Pennsieve platform
Digital Object Identifiers (DOIs)
Common dataset licenses
Markdown Guide

Developers

Pennsieve Client Overview
Installing the Pennsieve Agent
Configuring client credentials
Interacting with Pennsieve programmatically
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Public Datasets

Pennsieve Discover Overview
Structure of published datasets
AWS Account Configuration
Installing the AWS CLI
Downloading a public dataset
Copy datasets to an AWS account

Policies

Pennsieve Terms of Service
Privacy Policy
Pennsieve Dataset Submission Requirements

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Pennsieve sandbox

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Updated 8 days ago

Welcome to Pennsieve!

Uploading data to Pennsieve

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